Package index
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EIC_contaminants() - Find EICs that behave like contaminants
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closest_match() - Match list of standards to peak table
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extract_polarity() - Extract polarity from xcmsRaw object.
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get_EICs() - Get EICs from xcmsRaw object
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get_QC4Metabolomics_settings() - Get table with QC4metabolomics settings
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get_cont_list() - Get list of known contaminants
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ic_boxes() - Convert raw data into a tibble of xcmsRaw objects.
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ic_measurements() - Convert raw data into a tibble of xcmsRaw objects.
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ic_token() - Convert raw data into a tibble of xcmsRaw objects.
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parse_filenames() - Parse filenames from given string
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peak_factor() - Calculate Tailing Factor and Asymmetry Factor
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plot_chrom() - Plot chromatogram
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plot_contaminants() - Bar plot of contaminants
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plotly_clean_tt() - Make replacements in plotly tooltips
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set_QC4Metabolomics_settings_from_file() - Set QC4metabolomics settings form env file
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tbl2ROI() - Convert a list of peaks (rt / m/z pairs) to a Region of Interest (ROI) list for use with
findPeaks
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xcmsRaw_to_tbl() - Convert raw data into a tibble of xcmsRaw objects.