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Changelog

Source: NEWS.md

Changes in v0.99.37 (commit: 66c8275)

Bug Fixes

  • format feature and sample counts with commas in memory warning (510cf4c)

Changes in v0.99.36 (commit: d1e4acb)

Bug Fixes

  • add Codecov token to test-coverage workflow and codecov.yml config (00cd38c)

Changes in v0.99.35 (commit: df27dba)

Bug Fixes

  • use GitHub CLI for remote branch deletion (bbebf0b)

Changes in v0.99.34 (commit: c975ea2)

Bug Fixes

  • exclude gh-pages branch from cleanup script (d537e92), closes #pages

Changes in v0.99.33 (commit: 418c139)

Bug Fixes

  • use native Codecov badge format instead of shields.io proxy (8edacf0)

Changes in v0.99.32 (commit: cbe2694)

Bug Fixes

  • replace dynamic release badge with static version badge (cd6814c)
  • revert release badge changes and update R-CMD-check badge (f5c03f3)
  • update codecov badge to use modern shields.io format (da2f085)

Changes in v0.99.31 (commit: 9d4b184)

Bug Fixes

  • remove duplicate semantic-release version headers from NEWS.md (5324197)

Changes in v0.99.30 (commit: 0b694e3)

Bug Fixes

Changes in v0.99.29 (commit: 88c761a)

Bug Fixes

  • strip semantic-release version header from NEWS.md (9617b0c)

Changes in v0.99.28 (commit: 8c46f9b)

Bug Fixes

  • add .Rbuildignore to suppress hidden files warning (11f4586)
  • add explicit MSnbase library call in vignette (6f3c6fb)
  • add explicit namespace references for fileNames in vignette (7d1e9f9)
  • add GitHub remote for commonMZ package (5401ce0)
  • add missing comma in Remotes and add S4Vectors to Suggests (974a3a8)
  • add missing rlang import for syms function (b0c0a58)
  • apply feature_group fix before CAMERA annotation in test (c6a09e3)
  • convert prepare-news.sh to Unix line endings (LF) (8abd768)
  • correct fileNames documentation link (018a7f6)
  • correct NEWS.md heading level for pkgdown (d526cb8)
  • correct sampleData assignment and add alt text to vignette plots (aa576af)
  • correct sampleData import from MsExperiment package (2f0be73)
  • correct xdata file paths to use system-specific location (8d60f1a)
  • ensure CAMERA annotation columns always exist in output (4baab46)
  • ensure commit messages use Bioconductor version instead of semantic version (bd5b03f)
  • ensure git tags are pushed to remote during release (8c9014b)
  • ensure package version stays below 1.0.0 for Bioconductor (b1bc012)
  • exclude .bioc_version file from package build (38da0f1)
  • explicitly delete tags from GitHub using git push (273786e)
  • handle both XCMSnExp and XcmsExperiment in pData test (6251bc9)
  • improve path matching in vignette to use basename (80a3aa1)
  • merge conflict (d5aa8dc)
  • prevent git push from pushing semantic-release tags (0b660a6)
  • prevent semantic-release from creating 1.0.x tags and releases (e1756b2)
  • prevent semantic-release from creating 1.0.x tags and releases (5863644)
  • remove sample_index from documentation (a63298c)
  • replace non-existent fileNames<- with proper dataOrigin replacement (3995b38)
  • resolve devtools::check() test failures with loadXcmsData (28f60b0)
  • resolve import issues and vignette build errors (0a18dec)
  • resolve NEWS.md duplicate versions and sync with GitHub releases (90f9180)
  • resolve package issues and improve CAMERA integration (cc7a73c)
  • resolve R CMD check warnings and test failures (238aaea)
  • resolve semantic-release sync-bioc-tag.sh execution failure (2609ea2)
  • resolve XcmsExperiment compatibility and CAMERA column issues (a2e50ee)
  • skip groupCorr step in vignette for small example dataset (561fa6a)
  • update author information with correct ORCID (0af1279)
  • update cleanup script with all incorrect tags found (1e62586)
  • use gh CLI API to delete tags instead of git push (9fe2793)
  • use gh CLI for git operations instead of password authentication (1caa30f)
  • use list.files with recursive search for CDF path matching (e85f6f5)
  • use loadXcmsData() instead of faahKO package (70c89b0)
  • use non-conflicting tagFormat for semantic-release (ab44eae)

Code Refactoring

  • comprehensive code improvements and function rename to tidy_peaklist (079448c)

Features

  • add commit SHAs to NEWS.md for traceability (07a41ce)
  • add groupFeatures integration from MsFeatures package (bea8117)
  • add XCMSnExp_CAMERA_peaklist_long function and comprehensive package structure (c0a7dc8)
  • integrate commonMZ for CAMERA adduct/fragment rules (ababed5)
  • make CAMERA annotations optional with XcmsExperiment support (dc802ab)

BREAKING CHANGES

  • Function renamed from XCMSnExp_CAMERA_peaklist_long to tidy_peaklist. Users must update function calls in existing code.

🤖 Generated with Claude Code

Co-Authored-By: Claude

Changes in v0.99.27 (commit: 8db4302)

Bug Fixes

  • use gh CLI API to delete tags instead of git push (9fe2793)

Changes in v0.99.26 (commit: 4fdf1c1)

Bug Fixes

  • explicitly delete tags from GitHub using git push (273786e)

Changes in v0.99.25 (commit: 34bfbf1)

Bug Fixes

  • prevent git push from pushing semantic-release tags (0b660a6)

Changes in v0.99.24 (commit: f4cf5c4)

Bug Fixes

  • update cleanup script with all incorrect tags found (1e62586)

Changes in v0.99.23 (commit: bb3f423)

Bug Fixes

  • add .Rbuildignore to suppress hidden files warning (11f4586)
  • add explicit MSnbase library call in vignette (6f3c6fb)
  • add explicit namespace references for fileNames in vignette (7d1e9f9)
  • add GitHub remote for commonMZ package (5401ce0)
  • add missing comma in Remotes and add S4Vectors to Suggests (974a3a8)
  • add missing rlang import for syms function (b0c0a58)
  • apply feature_group fix before CAMERA annotation in test (c6a09e3)
  • convert prepare-news.sh to Unix line endings (LF) (8abd768)
  • correct fileNames documentation link (018a7f6)
  • correct sampleData assignment and add alt text to vignette plots (aa576af)
  • correct sampleData import from MsExperiment package (2f0be73)
  • correct xdata file paths to use system-specific location (8d60f1a)
  • ensure CAMERA annotation columns always exist in output (4baab46)
  • ensure commit messages use Bioconductor version instead of semantic version (bd5b03f)
  • ensure git tags are pushed to remote during release (8c9014b)
  • ensure package version stays below 1.0.0 for Bioconductor (b1bc012)
  • exclude .bioc_version file from package build (38da0f1)
  • handle both XCMSnExp and XcmsExperiment in pData test (6251bc9)
  • improve path matching in vignette to use basename (80a3aa1)
  • merge conflict (d5aa8dc)
  • prevent semantic-release from creating 1.0.x tags and releases (e1756b2)
  • prevent semantic-release from creating 1.0.x tags and releases (5863644)
  • remove sample_index from documentation (a63298c)
  • replace non-existent fileNames<- with proper dataOrigin replacement (3995b38)
  • resolve devtools::check() test failures with loadXcmsData (28f60b0)
  • resolve import issues and vignette build errors (0a18dec)
  • resolve NEWS.md duplicate versions and sync with GitHub releases (90f9180)
  • resolve package issues and improve CAMERA integration (cc7a73c)
  • resolve R CMD check warnings and test failures (238aaea)
  • resolve semantic-release sync-bioc-tag.sh execution failure (2609ea2)
  • resolve XcmsExperiment compatibility and CAMERA column issues (a2e50ee)
  • skip groupCorr step in vignette for small example dataset (561fa6a)
  • update author information with correct ORCID (0af1279)
  • use gh CLI for git operations instead of password authentication (1caa30f)
  • use list.files with recursive search for CDF path matching (e85f6f5)
  • use loadXcmsData() instead of faahKO package (70c89b0)
  • use non-conflicting tagFormat for semantic-release (ab44eae)

Code Refactoring

  • comprehensive code improvements and function rename to tidy_peaklist (079448c)

Features

  • add commit SHAs to NEWS.md for traceability (07a41ce)
  • add groupFeatures integration from MsFeatures package (bea8117)
  • add XCMSnExp_CAMERA_peaklist_long function and comprehensive package structure (c0a7dc8)
  • integrate commonMZ for CAMERA adduct/fragment rules (ababed5)
  • make CAMERA annotations optional with XcmsExperiment support (dc802ab)

BREAKING CHANGES

  • Function renamed from XCMSnExp_CAMERA_peaklist_long to tidy_peaklist. Users must update function calls in existing code.

🤖 Generated with Claude Code

Co-Authored-By: Claude

Changes in v0.99.22 (commit: 9ee946e)

Bug Fixes

  • ensure commit messages use Bioconductor version instead of semantic version (bd5b03f)

Changes in v0.99.21 (commit: 35572fd)

Bug Fixes

  • use gh CLI for git operations instead of password authentication (1caa30f)

Changes in v0.99.20 (commit: c7c96ef)

Bug Fixes

  • add missing comma in Remotes and add S4Vectors to Suggests (974a3a8)
  • add missing rlang import for syms function (b0c0a58)
  • apply feature_group fix before CAMERA annotation in test (c6a09e3)
  • correct fileNames documentation link (018a7f6)
  • correct sampleData assignment and add alt text to vignette plots (aa576af)
  • ensure git tags are pushed to remote during release (8c9014b)
  • exclude .bioc_version file from package build (38da0f1)
  • handle both XCMSnExp and XcmsExperiment in pData test (6251bc9)
  • improve path matching in vignette to use basename (80a3aa1)
  • prevent semantic-release from creating 1.0.x tags and releases (5863644)
  • remove sample_index from documentation (a63298c)
  • resolve NEWS.md duplicate versions and sync with GitHub releases (90f9180)
  • resolve R CMD check warnings and test failures (238aaea)
  • resolve semantic-release sync-bioc-tag.sh execution failure (2609ea2)
  • use list.files with recursive search for CDF path matching (e85f6f5)

Code Refactoring

  • comprehensive code improvements and function rename to tidy_peaklist (079448c)

Features

  • add commit SHAs to NEWS.md for traceability (07a41ce)
  • add groupFeatures integration from MsFeatures package (bea8117)

BREAKING CHANGES

  • Function renamed from XCMSnExp_CAMERA_peaklist_long to tidy_peaklist. Users must update function calls in existing code.

🤖 Generated with Claude Code

Co-Authored-By: Claude

Changes in v0.99.19 (commit: 624a737)

Bug Fixes

  • add .Rbuildignore to suppress hidden files warning (11f4586)
  • add explicit MSnbase library call in vignette (6f3c6fb)
  • add explicit namespace references for fileNames in vignette (7d1e9f9)
  • add GitHub remote for commonMZ package (5401ce0)
  • add missing comma in Remotes and add S4Vectors to Suggests (974a3a8)
  • add missing rlang import for syms function (b0c0a58)
  • apply feature_group fix before CAMERA annotation in test (c6a09e3)
  • convert prepare-news.sh to Unix line endings (LF) (8abd768)
  • correct fileNames documentation link (018a7f6)
  • correct NEWS.md heading level for pkgdown (d526cb8)
  • correct sampleData assignment and add alt text to vignette plots (aa576af)
  • correct sampleData import from MsExperiment package (2f0be73)
  • correct xdata file paths to use system-specific location (8d60f1a)
  • ensure CAMERA annotation columns always exist in output (4baab46)
  • ensure commit messages use Bioconductor version instead of semantic version (bd5b03f)
  • ensure git tags are pushed to remote during release (8c9014b)
  • ensure package version stays below 1.0.0 for Bioconductor (b1bc012)
  • exclude .bioc_version file from package build (38da0f1)
  • explicitly delete tags from GitHub using git push (273786e)
  • handle both XCMSnExp and XcmsExperiment in pData test (6251bc9)
  • improve path matching in vignette to use basename (80a3aa1)
  • merge conflict (d5aa8dc)
  • prevent git push from pushing semantic-release tags (0b660a6)
  • prevent semantic-release from creating 1.0.x tags and releases (e1756b2)
  • prevent semantic-release from creating 1.0.x tags and releases (5863644)
  • remove sample_index from documentation (a63298c)
  • replace non-existent fileNames<- with proper dataOrigin replacement (3995b38)
  • resolve devtools::check() test failures with loadXcmsData (28f60b0)
  • resolve import issues and vignette build errors (0a18dec)
  • resolve NEWS.md duplicate versions and sync with GitHub releases (90f9180)
  • resolve package issues and improve CAMERA integration (cc7a73c)
  • resolve R CMD check warnings and test failures (238aaea)
  • resolve semantic-release sync-bioc-tag.sh execution failure (2609ea2)
  • resolve XcmsExperiment compatibility and CAMERA column issues (a2e50ee)
  • skip groupCorr step in vignette for small example dataset (561fa6a)
  • update author information with correct ORCID (0af1279)
  • update cleanup script with all incorrect tags found (1e62586)
  • use gh CLI API to delete tags instead of git push (9fe2793)
  • use gh CLI for git operations instead of password authentication (1caa30f)
  • use list.files with recursive search for CDF path matching (e85f6f5)
  • use loadXcmsData() instead of faahKO package (70c89b0)
  • use non-conflicting tagFormat for semantic-release (ab44eae)

Code Refactoring

  • comprehensive code improvements and function rename to tidy_peaklist (079448c)

Features

  • add commit SHAs to NEWS.md for traceability (07a41ce)
  • add groupFeatures integration from MsFeatures package (bea8117)
  • add XCMSnExp_CAMERA_peaklist_long function and comprehensive package structure (c0a7dc8)
  • integrate commonMZ for CAMERA adduct/fragment rules (ababed5)
  • make CAMERA annotations optional with XcmsExperiment support (dc802ab)

BREAKING CHANGES

  • Function renamed from XCMSnExp_CAMERA_peaklist_long to tidy_peaklist. Users must update function calls in existing code.

🤖 Generated with Claude Code

Co-Authored-By: Claude

Changes in v0.99.27 (commit: 8db4302)

Bug Fixes

  • use gh CLI API to delete tags instead of git push (9fe2793)

Changes in v0.99.26 (commit: 4fdf1c1)

Bug Fixes

  • explicitly delete tags from GitHub using git push (273786e)

Changes in v0.99.25 (commit: 34bfbf1)

Bug Fixes

  • prevent git push from pushing semantic-release tags (0b660a6)

Changes in v0.99.24 (commit: f4cf5c4)

Bug Fixes

  • update cleanup script with all incorrect tags found (1e62586)

Changes in v0.99.23 (commit: bb3f423)

Bug Fixes

  • add .Rbuildignore to suppress hidden files warning (11f4586)
  • add explicit MSnbase library call in vignette (6f3c6fb)
  • add explicit namespace references for fileNames in vignette (7d1e9f9)
  • add GitHub remote for commonMZ package (5401ce0)
  • add missing comma in Remotes and add S4Vectors to Suggests (974a3a8)
  • add missing rlang import for syms function (b0c0a58)
  • apply feature_group fix before CAMERA annotation in test (c6a09e3)
  • convert prepare-news.sh to Unix line endings (LF) (8abd768)
  • correct fileNames documentation link (018a7f6)
  • correct sampleData assignment and add alt text to vignette plots (aa576af)
  • correct sampleData import from MsExperiment package (2f0be73)
  • correct xdata file paths to use system-specific location (8d60f1a)
  • ensure CAMERA annotation columns always exist in output (4baab46)
  • ensure commit messages use Bioconductor version instead of semantic version (bd5b03f)
  • ensure git tags are pushed to remote during release (8c9014b)
  • ensure package version stays below 1.0.0 for Bioconductor (b1bc012)
  • exclude .bioc_version file from package build (38da0f1)
  • handle both XCMSnExp and XcmsExperiment in pData test (6251bc9)
  • improve path matching in vignette to use basename (80a3aa1)
  • merge conflict (d5aa8dc)
  • prevent semantic-release from creating 1.0.x tags and releases (e1756b2)
  • prevent semantic-release from creating 1.0.x tags and releases (5863644)
  • remove sample_index from documentation (a63298c)
  • replace non-existent fileNames<- with proper dataOrigin replacement (3995b38)
  • resolve devtools::check() test failures with loadXcmsData (28f60b0)
  • resolve import issues and vignette build errors (0a18dec)
  • resolve NEWS.md duplicate versions and sync with GitHub releases (90f9180)
  • resolve package issues and improve CAMERA integration (cc7a73c)
  • resolve R CMD check warnings and test failures (238aaea)
  • resolve semantic-release sync-bioc-tag.sh execution failure (2609ea2)
  • resolve XcmsExperiment compatibility and CAMERA column issues (a2e50ee)
  • skip groupCorr step in vignette for small example dataset (561fa6a)
  • update author information with correct ORCID (0af1279)
  • use gh CLI for git operations instead of password authentication (1caa30f)
  • use list.files with recursive search for CDF path matching (e85f6f5)
  • use loadXcmsData() instead of faahKO package (70c89b0)
  • use non-conflicting tagFormat for semantic-release (ab44eae)

Code Refactoring

  • comprehensive code improvements and function rename to tidy_peaklist (079448c)

Features

  • add commit SHAs to NEWS.md for traceability (07a41ce)
  • add groupFeatures integration from MsFeatures package (bea8117)
  • add XCMSnExp_CAMERA_peaklist_long function and comprehensive package structure (c0a7dc8)
  • integrate commonMZ for CAMERA adduct/fragment rules (ababed5)
  • make CAMERA annotations optional with XcmsExperiment support (dc802ab)

BREAKING CHANGES

  • Function renamed from XCMSnExp_CAMERA_peaklist_long to tidy_peaklist. Users must update function calls in existing code.

🤖 Generated with Claude Code

Co-Authored-By: Claude

Changes in v0.99.22 (commit: 9ee946e)

Bug Fixes

  • ensure commit messages use Bioconductor version instead of semantic version (bd5b03f)

Changes in v0.99.21 (commit: 35572fd)

Bug Fixes

  • use gh CLI for git operations instead of password authentication (1caa30f)

Changes in v0.99.20 (commit: c7c96ef)

Bug Fixes

  • add missing comma in Remotes and add S4Vectors to Suggests (974a3a8)
  • add missing rlang import for syms function (b0c0a58)
  • apply feature_group fix before CAMERA annotation in test (c6a09e3)
  • correct fileNames documentation link (018a7f6)
  • correct sampleData assignment and add alt text to vignette plots (aa576af)
  • ensure git tags are pushed to remote during release (8c9014b)
  • exclude .bioc_version file from package build (38da0f1)
  • handle both XCMSnExp and XcmsExperiment in pData test (6251bc9)
  • improve path matching in vignette to use basename (80a3aa1)
  • prevent semantic-release from creating 1.0.x tags and releases (5863644)
  • remove sample_index from documentation (a63298c)
  • resolve NEWS.md duplicate versions and sync with GitHub releases (90f9180)
  • resolve R CMD check warnings and test failures (238aaea)
  • resolve semantic-release sync-bioc-tag.sh execution failure (2609ea2)
  • use list.files with recursive search for CDF path matching (e85f6f5)

Code Refactoring

  • comprehensive code improvements and function rename to tidy_peaklist (079448c)

Features

  • add commit SHAs to NEWS.md for traceability (07a41ce)
  • add groupFeatures integration from MsFeatures package (bea8117)

BREAKING CHANGES

  • Function renamed from XCMSnExp_CAMERA_peaklist_long to tidy_peaklist. Users must update function calls in existing code.

🤖 Generated with Claude Code

Co-Authored-By: Claude

Changes in v0.99.19 (commit: 624a737)

Bug Fixes

  • add .Rbuildignore to suppress hidden files warning (11f4586)
  • add explicit MSnbase library call in vignette (6f3c6fb)
  • add explicit namespace references for fileNames in vignette (7d1e9f9)
  • add GitHub remote for commonMZ package (5401ce0)
  • add missing comma in Remotes and add S4Vectors to Suggests (974a3a8)
  • add missing rlang import for syms function (b0c0a58)
  • apply feature_group fix before CAMERA annotation in test (c6a09e3)
  • convert prepare-news.sh to Unix line endings (LF) (8abd768)
  • correct fileNames documentation link (018a7f6)
  • correct sampleData assignment and add alt text to vignette plots (aa576af)
  • correct sampleData import from MsExperiment package (2f0be73)
  • correct xdata file paths to use system-specific location (8d60f1a)
  • ensure CAMERA annotation columns always exist in output (4baab46)
  • ensure git tags are pushed to remote during release (8c9014b)
  • ensure package version stays below 1.0.0 for Bioconductor (b1bc012)
  • exclude .bioc_version file from package build (38da0f1)
  • handle both XCMSnExp and XcmsExperiment in pData test (6251bc9)
  • improve path matching in vignette to use basename (80a3aa1)
  • merge conflict (d5aa8dc)
  • remove sample_index from documentation (a63298c)
  • replace non-existent fileNames<- with proper dataOrigin replacement (3995b38)
  • resolve devtools::check() test failures with loadXcmsData (28f60b0)
  • resolve import issues and vignette build errors (0a18dec)
  • resolve NEWS.md duplicate versions and sync with GitHub releases (90f9180)
  • resolve package issues and improve CAMERA integration (cc7a73c)
  • resolve R CMD check warnings and test failures (238aaea)
  • resolve semantic-release sync-bioc-tag.sh execution failure (2609ea2)
  • resolve XcmsExperiment compatibility and CAMERA column issues (a2e50ee)
  • skip groupCorr step in vignette for small example dataset (561fa6a)
  • update author information with correct ORCID (0af1279)
  • use list.files with recursive search for CDF path matching (e85f6f5)
  • use loadXcmsData() instead of faahKO package (70c89b0)

Code Refactoring

  • comprehensive code improvements and function rename to tidy_peaklist (079448c)

Features

  • add commit SHAs to NEWS.md for traceability (07a41ce)
  • add groupFeatures integration from MsFeatures package (bea8117)
  • add XCMSnExp_CAMERA_peaklist_long function and comprehensive package structure (c0a7dc8)
  • integrate commonMZ for CAMERA adduct/fragment rules (ababed5)
  • make CAMERA annotations optional with XcmsExperiment support (dc802ab)

BREAKING CHANGES

  • Function renamed from XCMSnExp_CAMERA_peaklist_long to tidy_peaklist. Users must update function calls in existing code.

🤖 Generated with Claude Code

Co-Authored-By: Claude

Changes in v0.99.18 (commit: c3916f6)

Bug Fixes

  • ensure git tags are pushed to remote during release (8c9014b)

Features

  • add commit SHAs to NEWS.md for traceability (07a41ce)

Changes in v0.99.17 (commit: d9352af)

Bug Fixes

  • correct fileNames documentation link (018a7f6)
  • remove sample_index from documentation (a63298c)

Changes in v0.99.16 (commit: ac33a5d)

Bug Fixes

  • resolve R CMD check warnings and test failures (238aaea)

Changes in v0.99.15 (commit: b839a77)

Code Refactoring

  • comprehensive code improvements and function rename to tidy_peaklist (079448c)

BREAKING CHANGES

  • Function renamed from XCMSnExp_CAMERA_peaklist_long to tidy_peaklist. Users must update function calls in existing code.

🤖 Generated with Claude Code

Co-Authored-By: Claude

Changes in v0.99.14 (commit: 76e5916)

Bug Fixes

  • use list.files with recursive search for CDF path matching (e85f6f5)

Changes in v0.99.13 (commit: ee81fef)

Bug Fixes

  • improve path matching in vignette to use basename (80a3aa1)
  • resolve semantic-release sync-bioc-tag.sh execution failure (2609ea2)

Changes in v0.99.12 (commit: be6976b)

Bug Fixes

  • add missing comma in Remotes and add S4Vectors to Suggests (974a3a8)

Changes in v0.99.11 (commit: d82953f)

Bug Fixes

  • correct sampleData assignment and add alt text to vignette plots (aa576af)

Changes in v0.99.10 (commit: 2f68705)

Bug Fixes

  • add missing rlang import for syms function (b0c0a58)
  • apply feature_group fix before CAMERA annotation in test (c6a09e3)
  • exclude .bioc_version file from package build (38da0f1)
  • handle both XCMSnExp and XcmsExperiment in pData test (6251bc9)

Changes in v0.99.9 (commit: d105433)

Features

  • add groupFeatures integration from MsFeatures package (bea8117)

Changes in v0.99.8 (commit: 0e05abc)

Bug Fixes

  • add .Rbuildignore to suppress hidden files warning (11f4586)
  • add explicit MSnbase library call in vignette (6f3c6fb)
  • add explicit namespace references for fileNames in vignette (7d1e9f9)
  • add GitHub remote for commonMZ package (5401ce0)
  • convert prepare-news.sh to Unix line endings (LF) (8abd768)
  • correct sampleData import from MsExperiment package (2f0be73)
  • correct xdata file paths to use system-specific location (8d60f1a)
  • ensure CAMERA annotation columns always exist in output (4baab46)
  • ensure package version stays below 1.0.0 for Bioconductor (b1bc012)
  • merge conflict (d5aa8dc)
  • replace non-existent fileNames<- with proper dataOrigin replacement (3995b38)
  • resolve devtools::check() test failures with loadXcmsData (28f60b0)
  • resolve import issues and vignette build errors (0a18dec)
  • resolve NEWS.md duplicate versions and sync with GitHub releases (90f9180)
  • resolve package issues and improve CAMERA integration (cc7a73c)
  • resolve XcmsExperiment compatibility and CAMERA column issues (a2e50ee)
  • skip groupCorr step in vignette for small example dataset (561fa6a)
  • update author information with correct ORCID (0af1279)
  • use loadXcmsData() instead of faahKO package (70c89b0)

Features

  • add XCMSnExp_CAMERA_peaklist_long function and comprehensive package structure (c0a7dc8)
  • integrate commonMZ for CAMERA adduct/fragment rules (ababed5)
  • make CAMERA annotations optional with XcmsExperiment support (dc802ab)

Changes in v0.99.7 (commit: 08d950f)

Bug Fixes

  • replace non-existent fileNames<- with proper dataOrigin replacement (3995b38)

Changes in v0.99.6 (commit: 42429bf)

Bug Fixes

  • add explicit MSnbase library call in vignette (6f3c6fb)
  • add explicit namespace references for fileNames in vignette (7d1e9f9)

Changes in v0.99.5 (commit: f952c46)

Bug Fixes

  • add GitHub remote for commonMZ package (5401ce0)

Changes in v0.99.4 (commit: 41f32fd)

Features

  • integrate commonMZ for CAMERA adduct/fragment rules (ababed5)

Changes in v0.99.3 (commit: 729c750)

Bug Fixes

  • correct xdata file paths to use system-specific location (8d60f1a)

Changes in v0.99.2 (commit: cfed50a)

Bug Fixes

  • ensure package version stays below 1.0.0 for Bioconductor (b1bc012)

Changes in v0.99.1 (commit: b1ef759)

Bug Fixes

  • add .Rbuildignore to suppress hidden files warning (11f4586)
  • convert prepare-news.sh to Unix line endings (LF) (8abd768)
  • correct sampleData import from MsExperiment package (2f0be73)
  • ensure CAMERA annotation columns always exist in output (4baab46)
  • merge conflict (d5aa8dc)
  • resolve devtools::check() test failures with loadXcmsData (28f60b0)
  • resolve import issues and vignette build errors (0a18dec)
  • resolve package issues and improve CAMERA integration (cc7a73c)
  • resolve XcmsExperiment compatibility and CAMERA column issues (a2e50ee)
  • skip groupCorr step in vignette for small example dataset (561fa6a)
  • update author information with correct ORCID (0af1279)
  • use loadXcmsData() instead of faahKO package (70c89b0)

Features

  • add XCMSnExp_CAMERA_peaklist_long function and comprehensive package structure (c0a7dc8)
  • make CAMERA annotations optional with XcmsExperiment support (dc802ab)